Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs6587679 chr1:152481262 G/A 3.56E-5 508 33.87 44.77 37.77 KM Plot
KIRC rs66462826 chr6:50814877 C/A 5.17E-6 519 40.5 40.3 15.3 KM Plot
KIRC rs666160 chr11:125326615 A/G 3.08E-6 516 40.8 37.03 1.43 KM Plot
KIRC rs66675690 chr7:46582660 TG/T 5.06E-5 515 47.73 33.7 28.7 KM Plot
KIRC rs66790453 chr6:26107088 C/T 1.26E-8 510 41.27 36.95 3.37 KM Plot
KIRC rs66834257 chr6:50809141 G/A 4.63E-6 521 40.5 40.3 15.3 KM Plot
KIRC rs669052 chr11:125342130 A/C 4.84E-6 513 40.57 37.37 1.43 KM Plot
KIRC rs66983783 chr6:25821992 TATACA/T 4.72E-5 525 42.2 30.92 4.1 KM Plot
KIRC rs67092917 chr6:50815333 G/T 5.17E-6 519 40.5 40.3 15.3 KM Plot
KIRC rs67296946 chr6:26048559 T/G 6.04E-9 523 41.27 36.63 3.37 KM Plot
KIRC rs67554133 chr6:25866232 T/A 1.74E-5 521 41.13 33.93 4.1 KM Plot
KIRC rs6760857 chr2:67559647 G/A 4.41E-7 518 39.23 37.67 2.03 KM Plot
KIRC rs6782166 chr3:48351683 A/G 3.27E-5 523 39.62 41.27 19.13 KM Plot
KIRC rs67844427 chr6:25931020 G/A 2.11E-5 522 41.27 33.82 4.1 KM Plot
KIRC rs679182 chr11:125326058 G/C 3.87E-6 512 43 35.17 1.43 KM Plot